smallrnaseq - tool for short RNA analysis
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Contents:
Introduction
Command Line Interface
Screencast
Citation
FAQ
Installation
Linux
Mac OSX
Windows
Vienna package
Required dependencies
Installing R for differential expression
Using smallrnaseq
Usage
Configuration file settings
Examples
Outputs
Differential expression
Adapter trimming
Aligners
Alignment settings
References
Code Examples
Counting microRNAs
Counting isomiRs
Mapping to the genome
Novel miRNA prediction
Differential Expression
Methodology
Counting known miRNAs
Counting isomiRs
Counting genomic features
Novel miRNA prediction
smallrnaseq
smallrnaseq package
Indices and tables
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Index
Module Index
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