smallrnaseq - tool for short RNA analysis

Contents:

• Introduction
  • Command Line Interface
  • Screencast
  • Citation
  • FAQ
• Installation
  • Linux
  • Mac OSX
  • Windows
  • Vienna package
  • Required dependencies
  • Installing R for differential expression
• Using smallrnaseq
  • Usage
  • Configuration file settings
  • Examples
  • Outputs
  • Differential expression
  • Adapter trimming
  • Aligners
  • Alignment settings
  • References
• Code Examples
  • Counting microRNAs
  • Counting isomiRs
  • Mapping to the genome
  • Novel miRNA prediction
  • Differential Expression
• Methodology
  • Counting known miRNAs
  • Counting isomiRs
  • Counting genomic features
  • Novel miRNA prediction
• smallrnaseq
  • smallrnaseq package

Indices and tables

• Index
• Module Index
• Search Page